On the current status of Phakopsora pachyrhizi genome sequencing.
Identifieur interne : 000042 ( Main/Exploration ); précédent : 000041; suivant : 000043On the current status of Phakopsora pachyrhizi genome sequencing.
Auteurs : Marco Loehrer [Allemagne] ; Alexander Vogel [Allemagne] ; Bruno Huettel ; Richard Reinhardt ; Vladimir Benes [Allemagne] ; Sébastien Duplessis [France] ; Björn Usadel ; Ulrich Schaffrath [Allemagne]Source :
- Frontiers in plant science [ 1664-462X ] ; 2014.
Abstract
Recent advances in the field of sequencing technologies and bioinformatics allow a more rapid access to genomes of non-model organisms at sinking costs. Accordingly, draft genomes of several economically important cereal rust fungi have been released in the last 3 years. Aside from the very recent flax rust and poplar rust draft assemblies there are no genomic data available for other dicot-infecting rust fungi. In this article we outline rust fungus sequencing efforts and comment on the current status of Phakopsora pachyrhizi (Asian soybean rust) genome sequencing.
DOI: 10.3389/fpls.2014.00377
PubMed: 25221558
PubMed Central: PMC4147182
Affiliations:
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Aachen</wicri:noRegion></affiliation></author><author><name sortKey="Vogel, Alexander" sort="Vogel, Alexander" uniqKey="Vogel A" first="Alexander" last="Vogel">Alexander Vogel</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Botany and Molecular Genetics, Institute for Biology I, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Botany and Molecular Genetics, Institute for Biology I, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:regionArea><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion></affiliation></author><author><name sortKey="Huettel, Bruno" sort="Huettel, 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xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:regionArea><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion><wicri:noRegion>Rheinisch-Westfälische Technische Hochschule Aachen University Aachen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Recent advances in the field of sequencing technologies and bioinformatics allow a more rapid access to genomes of non-model organisms at sinking costs. Accordingly, draft genomes of several economically important cereal rust fungi have been released in the last 3 years. Aside from the very recent flax rust and poplar rust draft assemblies there are no genomic data available for other dicot-infecting rust fungi. In this article we outline rust fungus sequencing efforts and comment on the current status of Phakopsora pachyrhizi (Asian soybean rust) genome sequencing. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">25221558</PMID><DateCompleted><Year>2014</Year><Month>09</Month><Day>15</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>5</Volume><PubDate><Year>2014</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>On the current status of Phakopsora pachyrhizi genome sequencing.</ArticleTitle><Pagination><MedlinePgn>377</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2014.00377</ELocationID><Abstract><AbstractText>Recent advances in the field of sequencing technologies and bioinformatics allow a more rapid access to genomes of non-model organisms at sinking costs. Accordingly, draft genomes of several economically important cereal rust fungi have been released in the last 3 years. Aside from the very recent flax rust and poplar rust draft assemblies there are no genomic data available for other dicot-infecting rust fungi. In this article we outline rust fungus sequencing efforts and comment on the current status of Phakopsora pachyrhizi (Asian soybean rust) genome sequencing. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Loehrer</LastName><ForeName>Marco</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vogel</LastName><ForeName>Alexander</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute for Botany and Molecular Genetics, Institute for Biology I, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huettel</LastName><ForeName>Bruno</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Max Planck Institute for Plant Breeding Research, Köln Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reinhardt</LastName><ForeName>Richard</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Max Planck Institute for Plant Breeding Research, Köln Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Benes</LastName><ForeName>Vladimir</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Genomics Core Facility, European Molecular Biology Laboratory Heidelberg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Duplessis</LastName><ForeName>Sébastien</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique, Interactions Arbres/Microorganismes, UMR 1136, Champenoux France ; Université de Lorraine, Interactions Arbres/Microorganismes, UMR 1136, Vandoeuvre-lès-Nancy France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Usadel</LastName><ForeName>Björn</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Institute for Botany and Molecular Genetics, Institute for Biology I, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany ; Institute of Bio- and Geosciences-2 Plant Sciences, Institute for Bio- and Geosciences, Forschungszentrum Jülich, Jülich Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schaffrath</LastName><ForeName>Ulrich</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>08</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Asian soybean rust</Keyword><Keyword MajorTopicYN="N">fungal genomics</Keyword><Keyword MajorTopicYN="N">genome size</Keyword><Keyword MajorTopicYN="N">herterozygosity</Keyword><Keyword MajorTopicYN="N">k-mer analysis</Keyword><Keyword MajorTopicYN="N">next-generation sequencing</Keyword><Keyword MajorTopicYN="N">rust fungi</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>05</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>07</Month><Day>14</Day></PubMedPubDate><PubMedPubDate 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